publications
Since 2017
Nataliia Gnyliukh, Alexander Johnson, Marie-Kristin Nagel, Aline Monzer, David Babić,Annamaria Hlavata, Saqer S. Alotaibi, Erika Isono, Martin Loose, and Jiří Friml (2024) Role of dynamin-related proteins 2 and SH3P2 in clathrin-mediated endocytosis in Arabidopsis thaliana. Journal of Cell Science
Karin Vogel and Erika Isono (2024) Deubiquitylating enzymes in Arabidopsis thaliana endocytic protein degradation. Biochem Society Transactions 52(1):291-299
Soo Hyun Im, Bernard Lepetit, Niccolò Mosesso, Sandeep Shrestha, Laura Weiss, Marianne Nymark, Robert Roellig, Christian Wilhelm, Erika Isono, and Peter G Kroth (2023) Identification of promoter targets by Aureochrome 1a in the diatom Phaeodactylum tricornutum. Journal of Experimental Botany, erad47
Shane Maguire, Christian Scheibe, Terese Eisgruber, Niccolò Mosesso, Erika Isono, and Karin Hauser (2023) Membrane-specific and calcium-dependent binding of the Arabidopsis C2 domain protein CaLB revealed by ATR-FTIR spectroscopy. Spectrochim Acta A Mol Biomol Spectrosc. 307:1236
Jan Sala, Niccolò Mosesso, Erika Isono, and Claus Schwechheimer (2023) Arabidopsis thaliana B-GATA factors repress starch synthesis and gravitropic growth responses. New Phytologist, 239(3):979-991
Karin Vogel, Tobias Bläske, Marie-Kristin Nagel, Christoph Globisch, Shane Maguire, Lorenz Mattes, Christian Gude, Michael Kovermann, Karin Hauser, Christine Peter, and Erika Isono* (2022) Lipid-mediated activation of plasma membrane-localized deubiquitylating enzymes modulate endosomal trafficking. Nature Communications, 13:6897
Anna G. Burrichter, Stefanie Dörr, Paavo Bergmann, Sebastian Haiß, Anja Keller, Corentin Fournier, Paolo Franchini, Erika Isono, and David Schleheck (2021) Bacterial microcompartments for isethionate desulfonation in the taurine-degrading human-gut bacterium Bilophila wadsworthia. BMC Microbiology, 21(1):340
Erika Isono (2021) ESCRT Is a Great Sealer: Non-Endosomal Function of the ESCRT Machinery in Membrane Repair and Autophagy. Plant Cell Physiol. 62(5):766-774
Beatriz Orosa, Suayib Üstün, Luz I A Calderón Villalobos, Pascal Genschik, Daniel Gibbs, Michael John Holdsworth, Erika Isono, Maria Lois, Marco Trujillo*, Ari Sadanandom* (2020) Plant proteostasis - shaping the proteome: a research community aiming to understand molecular mechanisms that control protein abundance. New Phytol 227(4):1028-1033
Svetlana Boycheva Woltering and Erika Isono (2020) Knowing When to Self-Eat - Fine-Tuning Autophagy Through ATG8 Iso-forms in Plants. Front Plant Sci . 2020 Nov 3;11:579875.
Marie-Kristin Nagel and Erika Isono (2020) ESCRTs in Pflanzen: die Begleitung der Membranproteine zum Abbau. Biospektrum 4/2020
Karin Vogel and Erika Isono (2020) Detection of Phosphorylation on Immunoprecipitates From Total Protein Extracts of Arabidopsis Thaliana Seedlings. Methods Mol. Biol. 2177:169-182
Erika Isono (2020) TOL Keepers for Ubiquitin-Mediated Trafficking Routes in Plant Cells. Mol Plant 13(5):685-687.
Niccolò Mosesso, Marie-Kristin Nagel, and Erika Isono (2019) Ubiquitin recognition in endocytic trafficking - with or without ESCRT-0. J Cell Sci. 2019 132(16)
Marie-Kristin Nagel, Karin Vogel, and Erika Isono (2019) Transient Expression of ESCRT Components in Arabidopsis Root Cell Suspension Culture-Derived Protoplasts. Methods Mol Biol. 2019;1998:163-174.
Jin Gao, Ajeet Chaudhary, Prasad Vaddepalli, Marie-Kristin Nagel, Erika Isono, and Kay Schneitz (2019) The Arabidopsis receptor kinase STRUBBELIG undergoes clathrin-dependent endocytosis. J Exp Bot. 2019 Apr 25.
Niccolò Mosesso, Tobias Bläske, Marie-Kristin Nagel, Michael Laumann, and Erika Isono* (2019) Preparation of Clathrin-Coated Vesicles from Arabidopsis thaliana Seedlings. Frontiers in Plant Science 09. Jan. 2019
Torsten Schultz-Larsen, Andrea Lenk, Kamila Kalinowska, Lau Kræsing Vestergaard, Carsten Pedersen, Erika Isono, and Hans Thordal-Christensen (2018) The AMSH3 ESCRT-III-Associated Deubiquitinase Is Essential for Plant Immunity. Cell Reports, 25:2329–2338
Tsikou D, Ramirez EE, Psarrakou IS, Wong JE, Jensen DB, Wong JE, Jensen DB, Isono E, Radutoiu S, Papadopoulou KK, Radutoiu S, Papadopoulou KK (2018) A Lotus japonicus E3 ligase interacts with the Nod Factor Receptor 5 and positively regulates nodulation. BMC Plant Biol., 18(1):217
Mishev K, Lu Q, Denoo B, Peurois F, Dejonghe W, Hullaert J, De Rycke RM, Boeren S, Bretou M, De Munck S, Sharma IS, Goodman K, Kalinowska K, Storme V, Nguyen L, Drozdzecki A, Martins S, Nerinckx W, Audenaert D, Vert G, Madder A, Otegui MS, Isono E, Savvides S, Annaert W, de Vries SC, Cherfils J, Winne J, Russinova E. (2018) Nonselective chemical inhibition of Sec7 domain-containing ARF GEFs in Arabidopsis. Plant Cell, 30(10):2573-2593
Avin-Wittenberg T, Baluška F, Bozhkov PV, Elander PH, Fernie AR, Galili G, Hassan A, Hofius D, Isono E, Le Bars R, Masclaux-Daubresse C, Minina EA, Peled-Zehavi H, Coll NS, Sandalio LM, Satiat-Jeunemaitre B, Sirko A, Testillano PS, Batoko H. (2018) Review of Autophagy-related Approaches for Improving Nutrient Use Efficiency and Crop Yield Protection. Journal of Experimental Botany, 69(6):1335-1353
Kamila Kalinowska and Erika Isono* (2018) All roads lead to the vacuole autophagic transport as part of the endomembrane trafficking network in plants. Journal of Experimental Botany, 69(6):1313-1324
Marie-Kristin Nagel, Kamila Kalinowska, Karin Vogel, Gregory Reynolds, Zhixiang Wu, Franziska Anzenberger, Mie Ichikawa, Chie Tsutsumi, Masa H. Sato, Bernhard Kuster, Sebastian Y. Bednarek, Erika Isono* (2017) Arabidopsis SH3P2 is an ubiquitin-binding protein that functions together with ESCRT-I and the deubiquitylating enzyme AMSH3. Proc Natl Acad Sci USA, 114(34):E7197-E7204
Erika Isono* and Kamila Kalinowska (2017) ESCRT-dependent degradation of ubiquitylated plasma membrane proteins in plants. Current Opinion in Plant Biology, 40:49-55
Katrin Franz-Oberdorf, Andreas Langer, Ralf Strasser, Erika Isono, Quirin L. Ranftl, Christian Wunschel, Wilfried Schwab (2017) Physical interaction between the strawberry allergen Fra a 1 and an associated partner FaAP. Proteins, 85(10): 1891-1901
Before 2017
Kamila Kalinowska, Marie-Kristin Nagel, and Erika Isono* (2016) Measuring the Enzyme Activity of Arabidopsis Deubiquitylating Enzymes Methods Mol Biol., 2016;1450:35-44
Daniel Klionsky et al. (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) Autophagy, 2016 Jan 2;12(1):1-222
Kamila Kalinowska, Marie-Kristin Nagel, Kaija Goodman, Laura Cuyas, Franziska Anzenberger, Pascal Braun, Vicente Rubio, Marisa Otegui, and Erika Isono* (2015) Arabidopsis ALIX is important for recruiting the deubiquitinating enzyme AMSH to endosomes. Proc Natl Acad Sci U S A, 112(40):E5543-51
Anna Małolepszy, Dorian Fabian Urbański, Euan K. James, Niels Sandal, Erika Isono, Jens Stougaard, and Stig Uggerhøj Andersen (2015) The de-ubiquitinating enzyme AMSH1 is required for nodule infection and organogenesis in Lotus japonicus. Plant Journal, 83(4):719-31
Cornelia Kolb, Marie-Kristin Nagel, Kamila Kalinowska, Jörg Hagmann, Mie Ichikawa, Franziska Anzenberger, Angela Alkofer, Masa H. Sato, Pascal Braun, and Erika Isono* (2015) FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis thaliana. Plant Physiology, 167(4):1361-73
Mamoona Khan, Wilfried Rozhon, Tingting Chen, Marina Eremina, Simon Josef Unterholzner, Bernhardt Wurzinger, Andreas Bachmair, Markus Teige, Tobias Sieberer, Erika Isono, and Brigitte Poppenberger (2014) Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signaling. Nature Communications, 5:4687
Marie Barberon, Guillaume Dubeaux, Cornelia Kolb, Erika Isono, Enric Zelazny, and Grégory Vert (2014) Polarization of IRON-REGULATED TRANSPORTER 1 (IRT1) to the plant-soil interface plays crucial role in metal homeostasis. (2014) Proc Natl Acad Sci U S A, 111(22):8293-8
Erika isono* and Marie-Kristin Nagel (2014) Deubiquitinating enzymes and their emerging role in plant biology. Frontiers in Plant Science, 5:56, Review
Kamila Kalinowska and Erika Isono* (2014) Analysis of Global Ubiquitylation and Ubiquitin-Binding Domains Involved in Endosomal Trafficking. Methods Mol Biol (Plant Endosomes), 1209:189-202
Timo Höwing, Caroline Höfle, Marie-Kristin Nagel, Erika Isono, Ralph Hückelhoven, and Christine Gietl (2014) Endoplasmic reticulum KDEL-tailed cysteine endopeptidase 1 of Arabidopsis (AtCEP1) is involved in pathogen defense. Frontiers in Plant Science, 5:5
Anthi Katsiarimpa, Alfonso Munõz, Kamila Kalinowska, Tomohiro Uemura, Enrique Rojo, and Erika Isono*, # (20140) The ESCRT-III interacting deubiquitinating enzyme AMSH3 is essential for degradation of ubiquitinated membrane proteins in Arabidopsis thaliana. (# equal contribution) Plant Cell Phys, 55(4):727-36
Chitose Kami, Laure Allenbach, Melina Zourelidou, Karin Ljung, Frédéric Schutz, Erika Isono, Masaaki K. Watahiki, Kotaro T. Yamamoto, Claus Schwechheimer, and Christian Fankhauser (2014) PHYTOCHROME KINASE SUBSTRATE (PKS) proteins may control phototropism by modulating auxin-regulated gene expression. Plant J, 77(3):393-403
Georg Hierl, Timo Höwing, Erika Isono, Friedrich Lottspeich, and Christine Gietl (2014) Ex vivo processing for maturation of Arabidopsis KDEL-tailed cysteine endopeptidase 2 (AtCEP2) pro-enzyme and its storage in endoplasmic reticulum derived organelles. Plant Mol Biol, 84(6):605-20
Anthi Katsiarimpa#, Kamila Kalinowska#, Franziska Anzenberger, Corina Weis, Maya Ostertag, Claus Schwechheimer, Frédéric Brunner, Ralph Hückelhoven, and Erika Isono* (2013) AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis thaliana. (#equal contribution) Plant Cell, 25(6):2236-52
Esther Dolze, Fatima Chigri, Timo Höwing, Georg Hierl, Erika Isono, Ute C. Vothknecht, and Chrisine Gietl (2013) Calmodulin-like protein AtCML3 mediates dimerization of peroxisomal processing protease AtDEG15 and contributes to normal peroxisome metabolism. Plant Mol Biol, 83(6):607-624
Corina Weis, Sebastian Pfeilmeier, Erich Glawischnig, Erika Isono, Fiona Pachl, Hannes Hahne, Bernhard Kuster, Ruth Eichmann and Ralph Hückelhoven (2013) Co-immunoprecipitation-based identification of putative BAX INHIBITOR-1-interacting proteins involved in cell death regulation and plant - powdery mildew interactions. Mol Plant Pathol, 14(8):791-802
Benoît Derrien, Nicolas Baumberger, Mikhail Schepetilnikov, Corrado Viotti, Julia de Cillia, Véronique Ziegler-Graff, Erika Isono, Karin Schumacher, and Pascal Genschik (2012) Selective degradation of the antiviral component ARGONAUTE1 by the autophagy pathway. Proc Natl Acad Sci USA, 109(39):15942-6
Anthi Katsiarimpa, Franziska Anzenberger, Nicole Schlager, Susanne Neubert, Marie-Theres Hauser, Claus Schwechheimer, and Erika Isono* (2011) The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. Plant Cell, 23(8):3026-40
Björn Willige, Erika Isono, René Richter, Melina Zourelidou, and Claus Schwechheimer (2011) Gibberellin controls PIN-FORMED abundance and is required for auxin transport-dependent growth and development in Arabidopsis thaliana. Plant Cell, 23(6): 2184-95
Jana P. Hakenjos, René Richter, Esther M.N. Dohmann, Anthi Katsiarimpa, Erika Isono, and Claus Schwechheimer (2011) MLN4924 is an efficient inhibitor of NEDD8 conjugation in plants. Plant Physiol, 156(2):527-36
Erika Isono, Anthi Katsiarimpa, Isabel K. Müller, Franziska Anzenberger, York D. Stierhof, Niko Geldner, Joanne Chory, and Claus Schwechheimer (2010) The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. Plant Cell, 22(6):1826-37
Jacob Prestele, Georg Hierl, Christian Scherling, Stefan Hetkamp, Claus Schwechheimer, Erika Isono, Wolfram Weckwerth, Gerhard Wanner, and Christine Gietl (2010) Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import. Proc Natl Acad Sci USA, 107(33):14915-20
Claus Schwechheimer and Erika Isono (2010) The COP9 signalosome and its role in plant development. Review Eur J Cell Biol, 89(2-3):163-8
Erika Isono and Claus Schwechheimer (2010) Co-immunoprecipitation and protein blots. Methods Mol Biol, 655:377-87
Esther M.N. Dohmann, Mitchell Levesque, Erika Isono, Markus Schmid, and Claus Schwechheimer (2008) Auxin responses in mutants of the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome. Plant Physiol, 147:1369-79
Erika Isono, Kiyoshi Nishihara, Yasushi Saeki, Hideki Yashiroda, Naoko Kamata, Liying Ge, Takashi Ueda, Yoshiko Kikuchi, Keiji Tanaka, Akihiko Nakano, and Akio Toh-e (2007) The assembly pathway of the 19S regulatory particle of the yeast 26S proteasome. Mol Biol Cell, 18:569-80
Erika Isono and Akio Toh-e (2006) The molecular mechanism of the assembly of the 26S proteasome in yeast. Tanpakushitsu Kakusan Koso (PNE), Review, Japanese
Erika Isono, Naoko Saito, Naoko Kamata, Yasushi Saeki, and Akio Toh-e (2005) Functional analysis of Rpn6p, a lid component of the 26S proteasome, using temperature-sensitive rpn6 mutants of the yeast Saccharomyces cerevisiae. J Biol Chem, 280:6537-47
Yasushi Saeki, Erika Isono, and Akio Toh-e (2005) Preparation of ubiquitinated substrates by the PY motif-insertion method for monitoring 26S proteasome activity. Methods Enzym, 399:215-27
Yasushi Saeki, Erika Isono, and Akio Toh-e (2005) Knocking out ubiquitin proteasome system function in vivo and in vitro with genetically-encodable tandem ubiquitin. Methods Enzym, 399:64-74
Sachihiro Matsunaga, Wakana Uchida, Eduard Kejnovsky, Erika Isono, Francoise Moneger, Boris Vyskot, and Shigeyuki Kawano (2004) Characterization of two SEPALLATA MADS-Box Genes from the dioecious plant Silene latifolia. Sex Plant Reprod, 17:189-93
Yasushi Saeki, Erika Isono, Tomoko Oguchi, Masumi Shimada, Takayuki Sone, Hiroyuki Kawahara, Hideyoshi Yokosawa, and Akio Toh-e (2004) Intracellularly inducible, ubiquitin hydrolase-insensitive tandem ubiquitins inhibit the 26S proteasome activity and cell division. Genes Genet Syst, 79:77-86
Erika Isono, Yasushi Saeki, Hideyoshi Yokosawa, and Akio Toh-e (2004) Rpn7 Is required for the structural integrity of the 26S proteasome of Saccharomyces cerevisiae. J Biol Chem, 279:27168-76
Sachihiro Matsunaga, Erika Isono, Eduard Kejnovsky, Boris Vyskot, Jaroslav Dolezel, Shigeyuki Kawano, and Deborah Charlesworth (2003) Duplicative transfer of a MADS box gene to a plant Y chromosomome. Mol Biol Evol, 20:1062-9